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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
29
Hi-C
Assay category
576
DNA binding
506
Transcription
391
DNA accessibility
80
DNA methylation
29
3D chromatin structure
Date released
10
March, 2020
8
July, 2019
4
October, 2019
3
October, 2022
2
November, 2019
1
August, 2021
1
December, 2018
Available data
20
hic
18
bedpe bed3+
4
bed bed3+
4
bigWig
4
hdf5
3
cool
1
fastq
Organism
29
Homo sapiens
Biosample type
14
tissue
9
primary cell
4
in vitro differentiated cells
2
cell line
Organ
8
epithelium
6
musculature of body
6
pancreas
5
blood vessel
5
vasculature
4
limb
3
brain
3
heart
3
liver
2
vein
1
connective tissue
1
kidney
Project
26
AMP
3
HPAP
Genome assembly (visualization)
25
hg19
GRCh38
Lab
25
AMP-T2D consortium
Bing Ren, UCSD
3
Klaus Kaestner, Upenn
1
Katalin Susztak, Upenn
Audit category:
5
inconsistent ontology term
4
audit script error
organ_slims!
nerve
lab.title!
Bing Ren, UCSD
assembly!
GRCh38
BIOSAMPLE
ASSAY
29 results
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Hi-C
tissue
gastrocnemius medialis
4
psoas muscle
2
aorta
1
heart
1
heart left ventricle
1
+ See 5 more…
primary cell
endothelial cell of umbilical vein
2
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
endothelial cell of hepatic sinusoid
1
+ See 3 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
cardiac precursors (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
cell line
EndoC_BH1
1
HepG2
1
See all biosamples
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