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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
74
ATAC-seq
74
total RNA-seq
23
ChIP-seq
6
snATAC-seq
5
STARR-seq
3
Hi-C
2
Capture-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
180
Transcription
80
DNA accessibility
23
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
20
histone
20
histone modification
12
control
11
narrow histone mark
transcription factor
broad histone mark
1
RNA binding protein
Date released
710
February, 2021
341
May, 2020
307
May, 2021
295
August, 2021
255
August, 2017
226
October, 2019
206
June, 2019
202
February, 2023
200
May, 2022
168
July, 2018
112
November, 2017
108
July, 2019
64
March, 2020
59
September, 2020
57
May, 2019
56
September, 2018
54
November, 2019
49
April, 2018
47
September, 2023
42
October, 2018
37
April, 2019
37
December, 2017
31
February, 2018
24
February, 2020
24
November, 2018
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
15
May, 2024
13
October, 2017
12
January, 2019
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
7
December, 2018
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
123
tsv
85
bed narrowPeak
64
xls
57
txt
42
bam
26
bigWig
17
tagAlign
2
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
294
Homo sapiens
Biosample type
229
tissue
32
cell line
31
in vitro differentiated cells
3
primary cell
Organ
130
kidney
92
heart
22
liver
8
embryo
6
blood vessel
6
vasculature
5
epithelium
4
pancreas
2
artery
1
adipose tissue
1
connective tissue
Project
295
AMP
Genome assembly (visualization)
98
GRCh38
38
hg19
Lab
143
AMP-T2D consortium
128
Katalin Susztak, Upenn
24
Bing Ren, UCSD
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
organ_slims!
nerve
lab.title!
Struan F.A. Grant, CHOP
target.investigated_as!
transcription factor
broad histone mark
BIOSAMPLE
ASSAY
295 results
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single cell RNA-seq
ATAC-seq
total RNA-seq
ChIP-seq
snATAC-seq
STARR-seq
Hi-C
Capture-C
RNA microarray
whole genome sequencing assay
tissue
kidney
8
64
49
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 11 more…
cell line
HepG2
9
6
2
1
1
H1-hESC
8
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
10
7
14
primary cell
hepatocyte
3
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