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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1828
ChIP-seq
977
total RNA-seq
508
ATAC-seq
351
single cell RNA-seq
210
DNase-seq
69
WGBS
57
snATAC-seq
55
pCHi-C
34
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
RNA microarray
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Target of assay
5
control
5
nucleotide modification
Date released
10
November, 2020
5
January, 2018
Available data
5
bigWig
5
fastq
Organism
15
Homo sapiens
Biosample type
6
cell line
4
in vitro differentiated cells
4
tissue
1
stem cell
Organ
10
pancreas
6
epithelium
1
embryo
Project
15
AMP
Genome assembly (visualization)
5
hg18
Lab
10
Rohit N. Kulkarni, M.D., Ph.D.
5
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
organ_slims!
nerve
month_released!
February, 2021
BIOSAMPLE
ASSAY
15 results
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MeRIP-seq
GRO-seq
cell line
EndoC_BH1
6
in vitro differentiated cells
Posterior foregut
1
definitive endodermal cell
1
pancreatic endoderm
1
primitive gut cell
1
tissue
islet of Langerhans
4
stem cell
hESC
1
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