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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
216
ChIP-seq
Assay category
216
DNA binding
Target of assay
321
histone
321
histone modification
narrow histone mark
147
broad histone mark
65
control
4
transcription factor
Date released
56
August, 2017
52
November, 2017
49
May, 2021
23
May, 2020
15
August, 2021
12
October, 2017
9
October, 2019
February, 2021
Available data
2381
bam
2155
bigWig
1346
bed narrowPeak
1203
fastq
1036
tsv
875
bigBed narrowPeak
291
bed broadPeak
269
bigBed broadPeak
256
bed bed3+
216
tagAlign
153
zippedFastqFolder
72
txt
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
10
bed bed3
5
hdf5
4
tar
3
bed bedgraph
3
cool
2
csv
2
ibed
1
bedpe
1
vcf
Organism
211
Homo sapiens
Biosample type
128
tissue
53
primary cell
28
in vitro differentiated cells
7
cell line
Organ
64
brain
46
liver
15
connective tissue
12
pancreas
10
musculature of body
5
adipose tissue
4
epithelium
Project
172
AMP
44
T1D
Genome assembly (visualization)
106
GRCh38
91
hg19
Lab
172
AMP-T2D consortium
44
Kyle Gaulton, UCSD
Audit category:
3
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
6
inconsistent control read length
2
inconsistent assembly
organ_slims!
nerve
month_released!
February, 2021
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
216 results
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Clear Filters
ChIP-seq
tissue
liver
37
brain
12
caudate nucleus
10
layer of hippocampus
10
skeletal muscle tissue
10
+ See 15 more…
primary cell
monocyte
44
skeletal muscle myoblast
7
hepatocyte
2
in vitro differentiated cells
neural progenitor cell
13
adipocyte
10
cardiomyocytes
3
pancreatic PP cell
2
cell line
HepG2
7
See all biosamples
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