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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
48
ChIP-seq
38
ATAC-seq
5
DNase-seq
4
total RNA-seq
2
WGBS
2
single cell RNA-seq
1
pCHi-C
Assay category
48
DNA binding
43
DNA accessibility
6
Transcription
2
DNA methylation
Target of assay
26
histone
26
histone modification
18
broad histone mark
15
control
8
narrow histone mark
7
transcription factor
3
other context
3
other post-translational modification
1
RNA binding protein
Date released
February, 2021
35
February, 2023
26
October, 2019
9
November, 2018
7
December, 2018
7
January, 2019
5
May, 2019
3
July, 2019
2
August, 2021
2
February, 2020
2
June, 2019
1
March, 2020
1
October, 2017
Available data
76
bed narrowPeak
60
bam
45
bigWig
38
bigBed narrowPeak
24
fastq
7
tsv
5
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
Organism
100
Homo sapiens
Biosample type
98
tissue
2
primary cell
Organ
914
pancreas
788
liver
492
epithelium
346
kidney
327
heart
286
brain
229
connective tissue
170
vasculature
164
blood vessel
116
limb
105
adipose tissue
96
musculature of body
75
artery
69
blood
69
bodily fluid
61
eye
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
9
bone element
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
100
AMP
Genome assembly (visualization)
80
GRCh38
43
hg19
Lab
100
AMP-T2D consortium
organ_slims!
nerve
month_released!
February, 2021
BIOSAMPLE
ASSAY
100 results
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ChIP-seq
ATAC-seq
DNase-seq
total RNA-seq
WGBS
single cell RNA-seq
pCHi-C
tissue
coronary artery
5
36
2
1
tibial artery
23
1
2
1
spleen
20
1
1
2
1
pulmonary artery
2
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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