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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
17
ChIP-seq
4
ATAC-seq
4
total RNA-seq
2
DNase-seq
2
Hi-C
1
FAIRE-seq
1
pCHi-C
Assay category
17
DNA binding
7
DNA accessibility
4
Transcription
2
3D chromatin structure
Target of assay
15
histone
15
histone modification
9
broad histone mark
6
narrow histone mark
2
control
Date released
February, 2021
21
October, 2019
8
February, 2023
1
March, 2020
1
May, 2021
Available data
20
bam
15
bigWig
13
bed narrowPeak
13
bigBed narrowPeak
4
bed bed3
4
bed broadPeak
4
bigBed broadPeak
4
txt
2
bed bed3+
2
hic
1
bedpe bed3+
1
tar
Organism
31
Homo sapiens
Biosample type
23
primary cell
8
tissue
Organ
914
pancreas
788
liver
492
epithelium
346
kidney
327
heart
286
brain
229
connective tissue
170
vasculature
164
blood vessel
116
limb
105
adipose tissue
96
musculature of body
75
artery
69
blood
69
bodily fluid
61
eye
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
9
bone element
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
30
AMP
1
T1D
Genome assembly (visualization)
21
hg19
12
GRCh38
Lab
30
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
1
audit script error
organ_slims!
nerve
month_released!
February, 2021
BIOSAMPLE
ASSAY
31 results
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ChIP-seq
ATAC-seq
total RNA-seq
DNase-seq
Hi-C
FAIRE-seq
pCHi-C
primary cell
endothelial cell of umbilical vein
17
2
2
1
megakaryocyte
1
tissue
acetabular part of hip bone
1
1
ilium
1
1
ischium
1
1
pubis
1
1
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