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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
345
ChIP-seq
174
single cell RNA-seq
138
ATAC-seq
134
total RNA-seq
87
RNA microarray
27
WGBS
27
snATAC-seq
25
pCHi-C
17
DNase-seq
5
Hi-C
4
MeRIP-seq
3
snDrop-seq
2
RRBS
Assay category
345
DNA binding
308
Transcription
182
DNA accessibility
29
DNA methylation
5
3D chromatin structure
Target of assay
190
histone
190
histone modification
151
control
105
broad histone mark
85
narrow histone mark
6
RNA binding protein
6
transcription factor
2
nucleotide modification
Date released
228
August, 2021
104
August, 2017
93
February, 2021
76
November, 2017
68
October, 2019
62
February, 2023
47
September, 2023
40
May, 2024
29
October, 2018
27
May, 2022
24
February, 2020
23
May, 2020
22
March, 2020
May, 2019
19
April, 2020
17
July, 2019
16
June, 2019
15
April, 2019
14
May, 2023
12
December, 2017
10
October, 2017
9
November, 2018
8
January, 2021
4
December, 2018
4
July, 2018
4
November, 2020
4
September, 2017
3
December, 2019
2
March, 2019
2
May, 2021
1
August, 2022
1
January, 2019
Available data
226
bam
207
bed narrowPeak
157
tsv
156
txt
133
tagAlign
125
bigWig
83
fastq
68
bigBed narrowPeak
64
xls
17
bed broadPeak
16
bed bed3+
16
bed bedMethyl
16
bigBed bedMethyl
16
bigBed broadPeak
6
csv
1
bedpe bed3+
Organism
985
Homo sapiens
Biosample type
988
tissue
459
primary cell
132
cell line
97
in vitro differentiated cells
7
stem cell
Organ
207
kidney
194
heart
119
brain
93
liver
91
pancreas
88
bone element
65
connective tissue
64
adipose tissue
52
blood vessel
52
vasculature
44
artery
26
eye
25
limb
20
lung
20
musculature of body
nerve
11
spleen
5
gonad
5
ovary
4
skeleton
3
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
893
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
1736
GRCh38
hg19
Lab
679
AMP-T2D consortium
141
Katalin Susztak, Upenn
47
KPMP
40
Patrick T. Ellinor, Broad
34
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
87
inconsistent ontology term
8
audit script error
Audit category:
1
missing controlled_by
organ_slims!
nerve
month_released!
May, 2019
assembly!
hg19
BIOSAMPLE
ASSAY
988 results
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Clear Filters
ChIP-seq
single cell RNA-seq
ATAC-seq
total RNA-seq
RNA microarray
WGBS
snATAC-seq
pCHi-C
DNase-seq
Hi-C
MeRIP-seq
snDrop-seq
RRBS
tissue
kidney
7
64
75
49
6
islet of Langerhans
40
26
32
7
4
1
4
liver
62
1
20
3
1
bone element
84
left cardiac atrium
40
18
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