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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
174
DNase-seq
35
ChIP-seq
2
ATAC-seq
Assay category
176
DNA accessibility
35
DNA binding
Target of assay
35
histone
35
histone modification
20
broad histone mark
15
narrow histone mark
Date released
163
June, 2019
26
August, 2017
9
November, 2018
6
November, 2017
4
October, 2017
2
October, 2019
1
March, 2019
Available data
1750
bam
1608
bigWig
1071
tsv
824
bed narrowPeak
442
bigBed narrowPeak
377
fastq
238
tagAlign
211
bed broadPeak
203
bed bed3+
174
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
205
Homo sapiens
Biosample type
211
tissue
59
cell line
49
primary cell
1
in vitro differentiated cells
Organ
68
kidney
45
musculature of body
36
brain
36
limb
27
heart
20
pancreas
18
ureter
5
blood vessel
5
vasculature
4
artery
3
adipose tissue
3
connective tissue
3
eye
3
liver
nerve
1
spleen
Project
211
AMP
Genome assembly (visualization)
194
hg19
189
GRCh38
Lab
209
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
1
inconsistent assembly
organ_slims!
nerve
month_released!
May, 2019
BIOSAMPLE
ASSAY
211 results
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Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
brain
14
3
muscle of arm
17
kidney
13
muscle of leg
13
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