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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
34
DNase-seq
24
ChIP-seq
7
ATAC-seq
4
Hi-C
2
total RNA-seq
1
WGBS
Assay category
41
DNA accessibility
24
DNA binding
4
3D chromatin structure
2
Transcription
1
DNA methylation
Target of assay
19
histone
19
histone modification
14
broad histone mark
5
control
5
narrow histone mark
Date released
32
June, 2019
27
October, 2019
May, 2019
6
February, 2021
5
July, 2019
2
February, 2020
Available data
65
bam
59
bed narrowPeak
54
bigWig
52
bigBed narrowPeak
34
bed bed3+
34
bed broadPeak
34
bigBed broadPeak
2
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
72
Homo sapiens
Biosample type
72
tissue
Organ
944
pancreas
791
liver
684
connective tissue
519
epithelium
491
adipose tissue
349
kidney
332
heart
258
brain
186
vasculature
180
blood vessel
159
bone element
136
artery
115
limb
89
musculature of body
69
blood
69
bodily fluid
61
eye
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
72
AMP
Genome assembly (visualization)
60
GRCh38
59
hg19
Lab
72
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
organ_slims!
nerve
month_released!
May, 2019
BIOSAMPLE
ASSAY
72 results
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DNase-seq
ChIP-seq
ATAC-seq
Hi-C
total RNA-seq
WGBS
tissue
tibial artery
2
23
1
1
muscle of arm
17
muscle of leg
13
1
gastrocnemius medialis
4
1
distal epiphysis of femur
1
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