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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
DNase-seq
24
ChIP-seq
7
ATAC-seq
4
Hi-C
2
total RNA-seq
1
WGBS
Assay category
40
DNA accessibility
24
DNA binding
4
3D chromatin structure
2
Transcription
1
DNA methylation
Target of assay
19
histone
19
histone modification
14
broad histone mark
5
control
5
narrow histone mark
Date released
31
June, 2019
27
October, 2019
May, 2019
6
February, 2021
5
July, 2019
2
February, 2020
Available data
64
bam
58
bed narrowPeak
53
bigWig
51
bigBed narrowPeak
33
bed bed3+
33
bed broadPeak
33
bigBed broadPeak
2
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
71
Homo sapiens
Biosample type
71
tissue
Organ
863
pancreas
790
liver
665
connective tissue
490
adipose tissue
431
epithelium
366
heart
329
kidney
255
brain
185
vasculature
180
blood vessel
136
artery
114
limb
80
musculature of body
75
bone element
69
blood
69
bodily fluid
61
eye
nerve
31
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
Project
71
AMP
Genome assembly (visualization)
59
GRCh38
58
hg19
Lab
71
AMP-T2D consortium
Audit category:
inconsistent ontology term
organ_slims!
nerve
month_released!
May, 2019
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
71 results
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DNase-seq
ChIP-seq
ATAC-seq
Hi-C
total RNA-seq
WGBS
tissue
tibial artery
2
23
1
1
muscle of arm
17
muscle of leg
12
1
gastrocnemius medialis
4
1
distal epiphysis of femur
1
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