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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
48
total RNA-seq
2
pCHi-C
2
single cell RNA-seq
Assay category
50
Transcription
Date released
May, 2021
22
February, 2021
15
February, 2018
7
August, 2021
4
March, 2020
2
December, 2019
2
October, 2019
Available data
206
bam
170
bigWig
141
fastq
127
bed narrowPeak
52
tsv
34
tagAlign
25
bed bed3+
17
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
52
Homo sapiens
Biosample type
1033
tissue
218
primary cell
115
cell line
52
in vitro differentiated cells
4
stem cell
Organ
4
connective tissue
4
embryo
Project
52
AMP
Genome assembly (visualization)
48
GRCh38
48
hg19
Lab
52
AMP-T2D consortium
Audit category:
25
inconsistent ontology term
2
audit script error
organ_slims!
nerve
month_released!
May, 2021
BIOSAMPLE
ASSAY
52 results
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total RNA-seq
pCHi-C
single cell RNA-seq
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
19
neural progenitor cell
7
cardiomyocytes (cardiac muscle cell)
2
1
2
adipocyte
4
pancreatic endoderm
4
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