Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1744
ChIP-seq
1468
total RNA-seq
455
ATAC-seq
299
single cell RNA-seq
129
DNase-seq
85
RNA microarray
78
snATAC-seq
75
WGBS
55
pCHi-C
33
Hi-C
17
RRBS
17
small RNA-seq
10
MeRIP-seq
5
GRO-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
STARR-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
129
DNA accessibility
Date released
109
June, 2019
9
November, 2018
5
August, 2017
5
October, 2019
1
November, 2020
Available data
128
bam
128
bed narrowPeak
128
bigBed narrowPeak
128
bigWig
126
bed broadPeak
126
bigBed broadPeak
124
bed bed3+
12
fastq
Organism
129
Homo sapiens
Biosample type
108
tissue
19
primary cell
1
cell line
1
in vitro differentiated cells
Organ
kidney
36
limb
33
musculature of body
32
brain
30
heart
19
epithelium
18
ureter
11
vasculature
9
blood vessel
9
connective tissue
8
pancreas
6
liver
4
artery
4
eye
2
adipose tissue
nerve
2
vein
1
spleen
Project
129
AMP
Genome assembly (visualization)
126
GRCh38
112
hg19
Lab
129
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
organ_slims!
nerve
kidney
BIOSAMPLE
ASSAY
129 results
search-icon
table-tab-icon
Clear Filters
DNase-seq
tissue
heart
18
muscle of arm
17
brain
14
muscle of leg
13
body of pancreas
4
+ See 30 more…
primary cell
cardiac fibroblast
3
endothelial cell of umbilical vein
2
skeletal muscle myoblast
2
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
+ See 10 more…
cell line
Panc1
1
in vitro differentiated cells
adipocyte
1
See all biosamples
Download