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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
217
ChIP-seq
32
DNase-seq
17
total RNA-seq
4
small RNA-seq
3
ATAC-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
1
FAIRE-seq
Assay category
217
DNA binding
36
DNA accessibility
24
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
186
histone
186
histone modification
116
narrow histone mark
70
broad histone mark
31
control
3
RNA binding protein
3
transcription factor
Date released
91
November, 2017
84
October, 2019
30
June, 2019
28
May, 2019
18
July, 2019
16
October, 2017
12
February, 2020
March, 2020
2
November, 2018
1
February, 2023
Available data
242
bam
221
bigWig
202
bed narrowPeak
127
bigBed narrowPeak
117
tagAlign
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
24
tsv
21
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
282
Homo sapiens
Biosample type
261
tissue
21
primary cell
Organ
932
pancreas
788
liver
682
connective tissue
518
epithelium
490
adipose tissue
386
heart
352
kidney
284
brain
232
vasculature
226
blood vessel
159
bone element
141
artery
122
limb
91
musculature of body
69
blood
69
bodily fluid
61
eye
nerve
37
embryo
24
spleen
21
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pericardium
pituitary gland
1
bone marrow
1
lymph node
1
skin of body
1
spinal cord
1
thymus
Project
282
AMP
Genome assembly (visualization)
216
GRCh38
163
hg19
Lab
282
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
organ_slims!
nerve
pituitary gland
month_released!
March, 2020
BIOSAMPLE
ASSAY
282 results
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ChIP-seq
DNase-seq
total RNA-seq
small RNA-seq
ATAC-seq
Hi-C
single cell RNA-seq
RRBS
FAIRE-seq
tissue
brain
20
14
1
1
1
layer of hippocampus
23
caudate nucleus
15
1
1
substantia nigra
16
1
temporal lobe
15
1
1
+ See 74 more…
primary cell
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
brain pericyte
1
1
cerebellar granule cell
2
+ See 2 more…
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