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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
126
ChIP-seq
32
DNase-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
126
DNA binding
37
DNA accessibility
24
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
113
histone
113
histone modification
85
narrow histone mark
28
broad histone mark
16
control
Date released
November, 2017
85
October, 2019
30
June, 2019
28
May, 2019
18
July, 2019
16
October, 2017
12
February, 2020
2
March, 2020
2
November, 2018
1
February, 2023
Available data
165
bam
156
bigWig
139
bed narrowPeak
64
bigBed narrowPeak
52
tagAlign
35
bed bed3+
35
bed broadPeak
32
bigBed broadPeak
26
tsv
12
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
tagAlign bed3+
Organism
194
Homo sapiens
Biosample type
182
tissue
12
primary cell
Organ
946
pancreas
684
connective tissue
518
epithelium
491
adipose tissue
476
liver
393
heart
354
kidney
230
vasculature
227
blood vessel
194
brain
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
194
AMP
Genome assembly (visualization)
153
GRCh38
148
hg19
Lab
194
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
organ_slims!
nerve
month_released!
November, 2017
files.file_type!
tagAlign bed3+
BIOSAMPLE
ASSAY
194 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
pCHi-C
FAIRE-seq
tissue
brain
20
14
1
1
1
temporal lobe
15
1
1
angular gyrus
15
cerebellum (Hemisphere)
2
1
1
1
1
frontal cortex
2
2
1
1
+ See 75 more…
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
brain pericyte
1
1
cerebellar granule cell
2
choroid plexus epithelial cell
1
1
+ See 2 more…
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