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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
DNase-seq
8
ChIP-seq
6
ATAC-seq
4
Hi-C
1
WGBS
1
total RNA-seq
Assay category
38
DNA accessibility
8
DNA binding
4
3D chromatin structure
1
DNA methylation
1
Transcription
Target of assay
7
histone
7
histone modification
4
broad histone mark
3
narrow histone mark
1
control
Date released
32
June, 2019
7
May, 2019
6
February, 2021
5
July, 2019
1
February, 2020
1
October, 2019
Available data
46
bam
44
bed narrowPeak
39
bigWig
38
bigBed narrowPeak
32
bed bed3+
32
bed broadPeak
32
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
1
tsv
Organism
52
Homo sapiens
Biosample type
52
tissue
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
354
kidney
353
heart
286
brain
236
vasculature
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
52
AMP
Genome assembly (visualization)
44
GRCh38
44
hg19
Lab
52
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
organ_slims!
nerve
blood vessel
BIOSAMPLE
ASSAY
52 results
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DNase-seq
ChIP-seq
ATAC-seq
Hi-C
WGBS
total RNA-seq
tissue
muscle of leg
13
7
1
muscle of arm
17
gastrocnemius medialis
4
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
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