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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
34
DNase-seq
7
ATAC-seq
6
ChIP-seq
4
Hi-C
2
total RNA-seq
1
WGBS
Assay category
41
DNA accessibility
6
DNA binding
4
3D chromatin structure
2
Transcription
1
DNA methylation
Target of assay
25
histone
histone modification
18
broad histone mark
7
narrow histone mark
6
control
Date released
32
June, 2019
8
October, 2019
6
February, 2021
5
July, 2019
2
February, 2020
1
May, 2019
Available data
48
bam
41
bed narrowPeak
36
bigWig
34
bed bed3+
34
bed broadPeak
34
bigBed broadPeak
34
bigBed narrowPeak
2
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
54
Homo sapiens
Biosample type
54
tissue
Organ
795
pancreas
688
liver
606
connective tissue
459
adipose tissue
431
epithelium
324
kidney
291
heart
165
vasculature
160
blood vessel
159
bone element
121
artery
99
brain
73
limb
68
blood
68
bodily fluid
63
musculature of body
58
eye
25
embryo
20
lung
nerve
19
spleen
18
ureter
16
skeleton
7
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
54
AMP
Genome assembly (visualization)
42
GRCh38
41
hg19
Lab
54
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
organ_slims!
nerve
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
54 results
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DNase-seq
ATAC-seq
ChIP-seq
Hi-C
total RNA-seq
WGBS
tissue
muscle of arm
17
muscle of leg
13
1
1
tibial artery
2
1
5
1
gastrocnemius medialis
4
1
distal epiphysis of femur
1
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