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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
343
ChIP-seq
Assay category
343
DNA binding
Target of assay
721
histone modification
720
histone
499
transcription factor
376
narrow histone mark
343
broad histone mark
297
control
99
RNA binding protein
89
recombinant protein
35
chromatin remodeller
5
nucleotide modification
5
other context
5
other post-translational modification
Date released
93
August, 2017
56
May, 2019
50
November, 2017
37
April, 2019
27
October, 2019
19
October, 2018
15
December, 2017
10
May, 2021
10
October, 2017
8
August, 2021
8
February, 2018
6
November, 2019
4
January, 2019
Available data
273
bigWig
272
bed narrowPeak
262
bam
205
bigBed narrowPeak
96
tagAlign
85
fastq
28
bed broadPeak
11
bed bed3+
8
bigBed broadPeak
Organism
339
Homo sapiens
Biosample type
267
tissue
primary cell
56
in vitro differentiated cells
19
cell line
1
stem cell
Organ
70
brain
51
pancreas
41
liver
40
connective tissue
37
heart
36
blood vessel
36
vasculature
34
limb
20
adipose tissue
16
musculature of body
nerve
14
artery
13
epithelium
10
kidney
4
embryo
4
spleen
Project
343
AMP
Genome assembly (visualization)
260
GRCh38
237
hg19
Lab
332
AMP-T2D consortium
10
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
Audit category:
6
inconsistent ontology term
Audit category:
4
missing controlled_by
Audit category:
15
inconsistent control read length
1
inconsistent assembly
organ_slims!
nerve
biosample_type!
primary cell
BIOSAMPLE
ASSAY
343 results
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Clear Filters
ChIP-seq
tissue
liver
22
subcutaneous abdominal adipose tissue
20
heart left ventricle
15
islet of Langerhans
14
tibial artery
14
+ See 24 more…
in vitro differentiated cells
adipocyte
20
embryonic stem cell
11
hepatocyte
7
neural progenitor cell
7
pancreatic endoderm
4
+ See 5 more…
cell line
HepG2
9
EndoC_BH1
6
Panc1
4
stem cell
hESC
1
See all biosamples
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