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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
896
total RNA-seq
590
ChIP-seq
158
ATAC-seq
16
WGBS
16
small RNA-seq
14
DNase-seq
6
single cell RNA-seq
Assay category
918
Transcription
590
DNA binding
172
DNA accessibility
16
DNA methylation
Target of assay
494
histone modification
493
histone
251
narrow histone mark
242
broad histone mark
93
transcription factor
27
RNA binding protein
3
control
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
452
February, 2021
June, 2019
162
May, 2020
161
October, 2019
158
August, 2017
116
July, 2018
92
May, 2019
64
April, 2019
64
August, 2021
61
July, 2019
57
November, 2017
45
October, 2018
40
May, 2024
39
November, 2019
38
May, 2021
36
December, 2017
35
February, 2023
22
November, 2018
14
October, 2017
12
May, 2023
9
March, 2020
6
April, 2018
6
January, 2019
3
December, 2018
2
March, 2019
2
September, 2017
Available data
1549
bigWig
1540
bam
917
tsv
720
bed narrowPeak
392
bigBed narrowPeak
280
fastq
116
tagAlign
64
xls
41
bed bed3+
28
bed broadPeak
16
bed bedMethyl
16
bigBed bedMethyl
13
bigBed broadPeak
1
tagAlign bed3+
Organism
1690
Homo sapiens
Biosample type
1696
tissue
489
primary cell
464
cell line
265
in vitro differentiated cells
3
stem cell
Organ
479
connective tissue
421
adipose tissue
382
pancreas
238
liver
178
brain
164
heart
102
blood vessel
102
vasculature
97
kidney
66
bone element
64
limb
60
artery
31
nerve
16
spleen
10
musculature of body
8
skeleton
1
pituitary gland
Project
1694
AMP
2
T1D
Genome assembly (visualization)
1696
GRCh38
1608
hg19
Lab
1578
AMP-T2D consortium
75
Katalin Susztak, Upenn
40
Patrick T. Ellinor, Broad
1
Bing Ren, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
3
inconsistent ontology term
Audit category:
25
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
organ_slims!
ovary
month_released!
June, 2019
BIOSAMPLE
ASSAY
1696 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
WGBS
small RNA-seq
DNase-seq
single cell RNA-seq
tissue
adipose tissue
382
1
2
islet of Langerhans
260
25
22
1
6
liver
147
75
1
2
kidney
20
75
bone tissue
58
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