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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
396
total RNA-seq
12
ChIP-seq
3
small RNA-seq
2
ATAC-seq
2
WGBS
Assay category
399
Transcription
12
DNA binding
2
DNA accessibility
2
DNA methylation
Target of assay
12
transcription factor
Date released
386
February, 2021
14
August, 2017
12
July, 2019
1
May, 2023
1
November, 2019
1
October, 2017
Available data
423
bam
422
bigWig
398
tsv
23
fastq
11
bed narrowPeak
bigBed narrowPeak
6
bed bed3+
2
bed bedMethyl
2
bed broadPeak
2
bigBed bedMethyl
2
bigBed broadPeak
Organism
415
Homo sapiens
Biosample type
413
tissue
2
primary cell
Organ
546
pancreas
541
connective tissue
415
adipose tissue
219
epithelium
205
liver
172
heart
109
blood vessel
109
vasculature
103
artery
102
kidney
91
brain
66
bone element
29
embryo
13
limb
8
skeleton
7
musculature of body
5
nerve
3
spleen
1
pericardium
1
pituitary gland
Project
415
AMP
Genome assembly (visualization)
416
hg19
415
GRCh38
Lab
415
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
organ_slims!
ovary
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
415 results
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total RNA-seq
ChIP-seq
small RNA-seq
ATAC-seq
WGBS
tissue
adipose tissue
382
2
white adipose tissue
12
subcutaneous adipose tissue
6
1
omental fat pad
4
1
1
visceral abdominal adipose tissue
3
+ See 1 more…
primary cell
mesenchymal stem cell of adipose
1
1
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