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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
384
ChIP-seq
10
ATAC-seq
2
DNase-seq
Assay category
384
DNA binding
12
DNA accessibility
Target of assay
344
transcription factor
88
recombinant protein
60
RNA binding protein
35
histone
35
histone modification
22
chromatin remodeller
18
narrow histone mark
17
broad histone mark
2
other context
2
other post-translational modification
Date released
245
November, 2017
52
November, 2018
27
December, 2018
15
January, 2019
15
October, 2019
14
August, 2021
14
February, 2021
12
November, 2019
1
March, 2020
1
May, 2021
Available data
574
bam
514
bigWig
419
fastq
396
bed narrowPeak
347
bigBed narrowPeak
119
tsv
59
bed broadPeak
59
bigBed broadPeak
20
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
396
Homo sapiens
Biosample type
944
tissue
396
cell line
294
primary cell
132
in vitro differentiated cells
2
stem cell
Organ
300
liver
54
blood
54
bodily fluid
21
pancreas
15
epithelium
12
artery
12
blood vessel
12
heart
12
vasculature
8
kidney
Project
394
AMP
2
T1D
Genome assembly (visualization)
392
hg19
352
GRCh38
Lab
382
AMP-T2D consortium
14
Bing Ren, UCSD
Audit category:
21
inconsistent ontology term
1
inconsistent control
1
inconsistent replicate
Audit category:
6
missing controlled_by
Audit category:
24
inconsistent control read length
inconsistent control run_type
organ_slims!
ovary
audit.WARNING.category!
inconsistent control run_type
BIOSAMPLE
ASSAY
396 results
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ChIP-seq
ATAC-seq
DNase-seq
cell line
HepG2
299
1
GM12878
54
EndoC_BH1
13
1
smooth muscle cell of the coronary artery
4
8
Panc1
6
1
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