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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1662
ChIP-seq
1391
total RNA-seq
489
ATAC-seq
362
single cell RNA-seq
211
DNase-seq
84
RNA microarray
75
WGBS
54
snATAC-seq
51
pCHi-C
26
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
1
DNAme array
1
GRO-seq
1
whole genome sequencing assay
Assay category
54
DNA accessibility
Date released
21
May, 2022
16
January, 2021
9
April, 2020
6
August, 2021
2
February, 2023
Available data
21
zippedFastqFolder
Organism
54
Homo sapiens
Biosample type
29
primary cell
25
tissue
Organ
10
pancreas
9
lung
8
blood
8
bodily fluid
6
kidney
Project
21
HPAP
18
T1D
9
LungMap
6
AMP
Lab
21
Klaus Kaestner, Upenn
18
Kyle Gaulton, UCSD
9
Xin Sun, UCSD
6
Katalin Susztak, Upenn
Audit category:
audit script error
organ_slims!
ovary
biosample_type!
in vitro differentiated cells
audit.ERROR.category!
audit script error
BIOSAMPLE
ASSAY
54 results
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snATAC-seq
primary cell
Langerhans cell
21
peripheral blood mononuclear cell
8
tissue
lung
9
islet of Langerhans
6
kidney
6
pancreas
4
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