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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
67
total RNA-seq
64
ATAC-seq
18
ChIP-seq
6
snATAC-seq
5
STARR-seq
3
Hi-C
2
Capture-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
173
Transcription
70
DNA accessibility
18
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
11
transcription factor
6
histone
6
histone modification
5
control
narrow histone mark
2
broad histone mark
1
RNA binding protein
Date released
689
February, 2021
368
November, 2017
314
May, 2020
273
August, 2021
271
August, 2017
214
May, 2021
207
June, 2019
200
May, 2022
189
February, 2023
168
July, 2018
165
October, 2019
108
July, 2019
88
November, 2018
86
May, 2019
65
October, 2018
59
September, 2020
58
September, 2018
57
April, 2019
52
March, 2020
52
November, 2019
49
April, 2018
48
December, 2017
47
September, 2023
35
December, 2018
27
January, 2019
25
February, 2020
25
May, 2024
21
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
8
December, 2019
7
August, 2020
5
March, 2019
5
March, 2023
4
January, 2018
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
116
tsv
77
bed narrowPeak
64
xls
57
txt
21
bigWig
10
bam
2
bedpe bed3+
2
hic
2
tagAlign
1
bed bed3+
1
vcf
Organism
272
Homo sapiens
Biosample type
229
tissue
42
cell line
in vitro differentiated cells
2
primary cell
Organ
130
kidney
92
heart
31
liver
8
embryo
6
blood vessel
6
vasculature
4
epithelium
4
pancreas
2
artery
1
adipose tissue
1
connective tissue
Project
273
AMP
Genome assembly (visualization)
73
GRCh38
23
hg19
Lab
128
Katalin Susztak, Upenn
111
AMP-T2D consortium
34
Bing Ren, UCSD
Audit category:
3
inconsistent ontology term
organ_slims!
ovary
biosample_type!
in vitro differentiated cells
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
273 results
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single cell RNA-seq
total RNA-seq
ATAC-seq
ChIP-seq
snATAC-seq
STARR-seq
Hi-C
Capture-C
RNA microarray
whole genome sequencing assay
tissue
kidney
8
49
64
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 11 more…
cell line
HepG2
9
16
2
1
1
H1-hESC
8
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
primary cell
hepatocyte
2
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