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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
17
ATAC-seq
14
ChIP-seq
4
total RNA-seq
3
pCHi-C
2
Capture-C
1
Hi-C
1
RRBS
Assay category
17
DNA accessibility
14
DNA binding
4
Transcription
1
3D chromatin structure
1
DNA methylation
Target of assay
12
histone
12
histone modification
8
broad histone mark
4
narrow histone mark
2
control
Date released
14
August, 2017
13
February, 2023
4
August, 2021
4
February, 2021
2
July, 2019
2
October, 2019
1
August, 2018
1
March, 2020
1
May, 2021
Available data
bam
89
bigWig
62
bed narrowPeak
58
fastq
21
bed bed3+
21
tsv
18
bigBed narrowPeak
14
tagAlign
7
bed broadPeak
7
bigBed broadPeak
6
bed bed3
4
bed bedgraph
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hdf5
Organism
42
Homo sapiens
Biosample type
tissue
38
in vitro differentiated cells
3
primary cell
1
stem cell
Organ
192
epithelium
181
pancreas
42
connective tissue
37
liver
9
blood
9
bodily fluid
9
kidney
5
vasculature
4
blood vessel
4
brain
2
vein
1
adipose tissue
1
bone element
1
bone marrow
1
embryo
1
eye
1
heart
1
mammary gland
1
musculature of body
Project
41
AMP
1
T1D
Genome assembly (visualization)
21
hg19
Lab
37
AMP-T2D consortium
4
Struan F.A. Grant, CHOP
1
Kyle Gaulton, UCSD
Audit category:
6
inconsistent ontology term
organ_slims!
ovary
biosample_type!
tissue
files.file_type!
bam
BIOSAMPLE
ASSAY
42 results
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ATAC-seq
ChIP-seq
total RNA-seq
pCHi-C
Capture-C
Hi-C
RRBS
in vitro differentiated cells
adipocyte
8
14
1
1
chondrocyte
5
immature adipocyte
2
2
osteoblast
1
1
preadipocyte
1
1
+ See 1 more…
primary cell
adult endothelial progenitor cell
1
brain pericyte
1
cardiac fibroblast
1
stem cell
mesenchymal stem cell
1
See all biosamples
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