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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
410
ChIP-seq
104
total RNA-seq
3
ATAC-seq
2
DNase-seq
1
Hi-C
1
WGBS
Assay category
410
DNA binding
104
Transcription
5
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Target of assay
355
transcription factor
88
recombinant protein
63
RNA binding protein
37
histone
37
histone modification
29
chromatin remodeller
19
narrow histone mark
18
broad histone mark
13
control
2
other context
2
other post-translational modification
Date released
268
November, 2017
83
February, 2021
57
November, 2018
26
December, 2018
22
August, 2021
20
January, 2019
20
October, 2019
12
November, 2019
7
March, 2020
5
May, 2021
1
January, 2018
Available data
581
bam
521
bigWig
426
fastq
403
bed narrowPeak
354
bigBed narrowPeak
119
tsv
59
bed broadPeak
59
bigBed broadPeak
20
tagAlign
3
bed bed3+
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
521
Homo sapiens
Biosample type
1745
tissue
613
primary cell
521
cell line
259
in vitro differentiated cells
3
stem cell
Organ
332
liver
56
artery
56
blood vessel
56
heart
56
pancreas
56
vasculature
54
blood
54
bodily fluid
50
epithelium
12
kidney
8
embryo
Project
517
AMP
4
T1D
Genome assembly (visualization)
516
hg19
453
GRCh38
Lab
507
AMP-T2D consortium
14
Bing Ren, UCSD
Audit category:
58
inconsistent ontology term
inconsistent control
Audit category:
12
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
1
inconsistent assembly
organ_slims!
ovary
audit.ERROR.category!
inconsistent control
BIOSAMPLE
ASSAY
521 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
WGBS
cell line
HepG2
326
5
1
smooth muscle cell of the coronary artery
4
52
GM12878
53
1
EndoC_BH1
13
33
2
H1-hESC
8
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