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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
379
ATAC-seq
204
DNase-seq
25
snATAC-seq
3
FAIRE-seq
Assay category
1649
DNA binding
1315
Transcription
611
DNA accessibility
44
DNA methylation
25
3D chromatin structure
1
DNA sequencing
Date released
183
June, 2019
100
May, 2020
92
February, 2023
82
August, 2021
29
October, 2019
22
February, 2021
21
May, 2022
18
May, 2021
11
May, 2023
10
April, 2020
8
January, 2021
8
July, 2019
7
November, 2018
6
August, 2017
6
November, 2019
3
January, 2018
3
October, 2017
2
November, 2020
Available data
418
bed narrowPeak
314
bam
299
bigWig
209
bigBed narrowPeak
202
bed bed3+
199
bed broadPeak
199
bigBed broadPeak
64
xls
14
fastq
12
bed bed3
12
tsv
7
bed bedgraph
4
txt
1
tar
Organism
610
Homo sapiens
Biosample type
388
tissue
169
primary cell
43
in vitro differentiated cells
11
cell line
Organ
163
kidney
pancreas
77
heart
74
epithelium
58
vasculature
56
blood vessel
49
artery
44
limb
37
brain
35
musculature of body
34
connective tissue
32
eye
29
liver
18
ureter
12
bone element
12
skeleton
10
lung
9
blood
9
bodily fluid
8
adipose tissue
3
nerve
3
vein
2
spleen
1
pituitary gland
1
skin of body
Project
593
AMP
10
LungMap
8
T1D
Genome assembly (visualization)
374
GRCh38
374
hg19
Lab
482
AMP-T2D consortium
81
Katalin Susztak, Upenn
Klaus Kaestner, Upenn
20
Karen Mohlke, UNC
13
Kyle Gaulton, UCSD
10
Xin Sun, UCSD
5
Struan F.A. Grant, CHOP
Audit category:
27
inconsistent ontology term
1
audit script error
1
inconsistent replicate
organ_slims!
ovary
pancreas
lab.title!
Klaus Kaestner, Upenn
BIOSAMPLE
ASSAY
611 results
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Clear Filters
ATAC-seq
DNase-seq
snATAC-seq
FAIRE-seq
tissue
kidney
75
13
6
1
coronary artery
36
2
liver
20
2
heart
18
retina
15
3
+ See 58 more…
primary cell
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
monocyte
15
macrophage
11
peripheral blood mononuclear cell
8
+ See 53 more…
in vitro differentiated cells
neural progenitor cell
10
adipocyte
8
1
embryonic stem cell
6
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
chondrocyte
5
+ See 7 more…
cell line
smooth muscle cell of the coronary artery
8
GM12878
1
HepG2
1
glomerular visceral epithelial cell
1
See all biosamples
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