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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1860
ChIP-seq
1441
total RNA-seq
482
ATAC-seq
278
single cell RNA-seq
212
DNase-seq
86
RNA microarray
56
pCHi-C
35
snATAC-seq
31
Hi-C
28
WGBS
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
DNAme array
1
whole genome sequencing assay
Assay category
35
DNA accessibility
Date released
16
January, 2021
9
April, 2020
6
August, 2021
2
February, 2023
1
August, 2022
1
May, 2022
Available data
1
bed bed3+
1
txt
Organism
35
Homo sapiens
Biosample type
27
tissue
8
primary cell
Organ
11
pancreas
9
lung
8
blood
8
bodily fluid
6
kidney
1
musculature of body
Project
18
T1D
9
LungMap
8
AMP
Genome assembly (visualization)
1
hg19
Lab
Klaus Kaestner, Upenn
18
Kyle Gaulton, UCSD
9
Xin Sun, UCSD
6
Katalin Susztak, Upenn
2
AMP-T2D consortium
Audit category:
2
audit script error
organ_slims!
ovary
lab.title!
Klaus Kaestner, Upenn
BIOSAMPLE
ASSAY
35 results
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snATAC-seq
tissue
lung
9
islet of Langerhans
7
kidney
6
pancreas
4
skeletal muscle tissue
1
primary cell
peripheral blood mononuclear cell
8
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