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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
187
DNase-seq
46
ChIP-seq
25
total RNA-seq
8
ATAC-seq
Assay category
195
DNA accessibility
46
DNA binding
25
Transcription
Target of assay
31
histone
31
histone modification
18
broad histone mark
13
narrow histone mark
11
control
4
RNA binding protein
4
transcription factor
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
310
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
63
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
233
bam
224
bigWig
222
bed narrowPeak
216
bigBed narrowPeak
191
bed broadPeak
187
bed bed3+
187
bigBed broadPeak
25
tsv
17
fastq
14
tagAlign
Organism
266
Homo sapiens
Biosample type
211
tissue
55
primary cell
Organ
81
kidney
58
brain
45
musculature of body
38
heart
35
limb
21
connective tissue
20
epithelium
18
ureter
10
pancreas
10
vasculature
8
blood vessel
8
eye
4
adipose tissue
4
artery
3
liver
1
nerve
1
spinal cord
1
spleen
Project
266
AMP
Genome assembly (visualization)
224
GRCh38
200
hg19
Lab
265
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
27
inconsistent ontology term
Audit category:
4
missing controlled_by
organ_slims!
ovary
BIOSAMPLE
ASSAY
266 results
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Clear Filters
DNase-seq
ChIP-seq
total RNA-seq
ATAC-seq
tissue
brain
12
15
heart
18
muscle of arm
17
kidney
13
muscle of leg
13
+ See 50 more…
primary cell
cardiac fibroblast
3
5
skeletal muscle satellite cell
8
mesenchymal stem cell
7
cardiac muscle cell
1
3
epithelial cell of proximal tubule
1
3
+ See 17 more…
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