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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
86
ChIP-seq
44
total RNA-seq
18
small RNA-seq
15
RRBS
12
WGBS
11
ATAC-seq
8
Hi-C
3
single cell RNA-seq
2
FAIRE-seq
Assay category
86
DNA binding
65
Transcription
27
DNA methylation
13
DNA accessibility
8
3D chromatin structure
Target of assay
60
histone
60
histone modification
37
broad histone mark
23
control
23
narrow histone mark
6
transcription factor
4
RNA binding protein
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
310
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
63
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
172
bam
155
bigWig
77
bed narrowPeak
71
bigBed narrowPeak
65
tsv
23
bed bedMethyl
23
bigBed bedMethyl
11
fastq
6
bed bed3+
4
hdf5
Organism
199
Homo sapiens
Biosample type
163
tissue
36
primary cell
Organ
82
heart
34
kidney
18
brain
18
connective tissue
18
epithelium
17
pancreas
12
adipose tissue
12
vasculature
11
blood vessel
10
liver
10
musculature of body
5
limb
3
artery
2
pericardium
1
eye
Project
199
AMP
Genome assembly (visualization)
163
hg19
150
GRCh38
Lab
199
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
organ_slims!
ovary
BIOSAMPLE
ASSAY
199 results
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Clear Filters
ChIP-seq
total RNA-seq
small RNA-seq
RRBS
WGBS
ATAC-seq
Hi-C
single cell RNA-seq
FAIRE-seq
tissue
heart left ventricle
35
2
1
4
2
kidney
23
1
1
heart right ventricle
13
2
heart
9
2
1
1
islet of Langerhans
6
1
+ See 26 more…
primary cell
cerebellar granule cell
2
epithelial cell of proximal tubule
1
1
kidney epithelial cell
1
1
mesenchymal stem cell of adipose
1
1
pancreatic alpha cell
2
+ See 23 more…
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