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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
pCHi-C
15
total RNA-seq
9
Hi-C
4
ATAC-seq
3
ChIP-seq
Assay category
15
Transcription
9
3D chromatin structure
4
DNA accessibility
3
DNA binding
Target of assay
3
histone
3
histone modification
3
narrow histone mark
Date released
713
February, 2021
411
August, 2017
406
November, 2017
382
May, 2021
340
May, 2020
319
August, 2021
285
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
31
March, 2020
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
20
bigWig
16
bam
15
tsv
9
bedpe bed3+
9
hic
3
bed narrowPeak
Organism
31
Homo sapiens
Biosample type
20
tissue
7
cell line
4
in vitro differentiated cells
Organ
13
pancreas
6
epithelium
4
heart
4
musculature of body
3
blood vessel
3
vasculature
2
liver
vein
Project
24
AMP
7
T1D
Genome assembly (visualization)
29
hg19
16
GRCh38
Lab
31
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
organ_slims!
ovary
vein
assay_title!
pCHi-C
BIOSAMPLE
ASSAY
31 results
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Clear Filters
total RNA-seq
Hi-C
ATAC-seq
ChIP-seq
tissue
islet of Langerhans
2
2
2
psoas muscle
2
2
aorta
1
1
heart left ventricle
1
1
heart right ventricle
1
1
+ See 2 more…
cell line
EndoC_BH1
2
2
1
early embryonic cell
2
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
1
1
lymphocyte of B lineage (iPSC)
1
1
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