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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
16
ChIP-seq
2
WGBS
1
ATAC-seq
1
DNase-seq
1
pCHi-C
Assay category
16
DNA binding
2
DNA accessibility
2
DNA methylation
Target of assay
8
control
6
histone
6
histone modification
6
transcription factor
broad histone mark
3
other context
3
other post-translational modification
2
narrow histone mark
Date released
9
November, 2018
7
December, 2018
3
January, 2019
1
March, 2020
1
October, 2017
Available data
20
bam
20
fastq
12
bigWig
10
bed narrowPeak
9
bigBed narrowPeak
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
1
tsv
Organism
21
Homo sapiens
Biosample type
21
tissue
Organ
865
pancreas
741
liver
563
connective tissue
470
adipose tissue
463
epithelium
339
kidney
335
heart
216
brain
191
vasculature
185
blood vessel
159
bone element
127
artery
88
limb
76
musculature of body
69
blood
69
bodily fluid
61
eye
27
nerve
21
spleen
20
lung
18
ureter
16
skeleton
13
vein
8
embryo
5
gonad
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
21
AMP
Genome assembly (visualization)
12
GRCh38
10
hg19
Lab
21
AMP-T2D consortium
organ_slims!
ovary
target.investigated_as!
broad histone mark
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
21 results
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ChIP-seq
WGBS
ATAC-seq
DNase-seq
pCHi-C
tissue
spleen
16
2
1
1
1
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