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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
97
total RNA-seq
84
RNA microarray
23
ATAC-seq
9
pCHi-C
4
DNase-seq
4
Hi-C
4
single cell RNA-seq
2
RRBS
1
STARR-seq
Assay category
101
Transcription
DNA binding
27
DNA accessibility
4
3D chromatin structure
2
DNA methylation
Date released
102
February, 2021
66
May, 2021
12
March, 2020
11
February, 2023
11
October, 2019
8
May, 2020
6
November, 2019
4
June, 2019
2
December, 2019
2
July, 2019
1
August, 2021
1
February, 2020
1
July, 2018
1
June, 2018
Available data
114
bam
111
tsv
105
bigWig
85
txt
15
bed narrowPeak
6
bed bed3+
6
bedpe bed3+
4
bed broadPeak
4
bigBed broadPeak
4
bigBed narrowPeak
4
hic
2
bed bedMethyl
2
bigBed bedMethyl
2
fastq
2
ibed
1
bed bedgraph
Organism
228
Homo sapiens
Biosample type
108
in vitro differentiated cells
89
tissue
24
primary cell
6
cell line
1
stem cell
Organ
84
bone element
66
epithelium
pancreas
8
connective tissue
7
kidney
2
embryo
2
heart
1
adipose tissue
1
brain
1
limb
1
liver
1
musculature of body
1
stomach
1
urinary bladder
1
vasculature
Project
223
AMP
5
T1D
Genome assembly (visualization)
125
hg19
110
GRCh38
Lab
221
AMP-T2D consortium
5
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
1
Struan F.A. Grant, CHOP
Audit category:
228
inconsistent ontology term
38
audit script error
1
inconsistent replicate
organ_slims!
pancreas
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
228 results
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total RNA-seq
RNA microarray
ATAC-seq
pCHi-C
DNase-seq
Hi-C
single cell RNA-seq
RRBS
STARR-seq
in vitro differentiated cells
cardiomyocytes
59
cardiac precursors (cardiac muscle cell)
19
1
1
cardiomyocytes (cardiac muscle cell)
3
1
2
2
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
immature adipocyte
2
2
+ See 7 more…
tissue
bone element
84
adipose tissue(adipose white tissue)
1
bladder (urinary bladder)
1
cerebellum (Hemisphere)
1
gastric (mucosa of stomach)
1
+ See 1 more…
primary cell
naive B cel
2
2
1
central memory CD8-positive, alpha-beta T cell
2
2
gabaergic neuron
3
microglial cell/astrocyte
3
cardiac fibroblast
1
1
+ See 5 more…
cell line
RCC 7860 vector
1
1
RCC 7860 HIF1a re-expression
1
RCC 7860 HIF2a over-expression
1
RCC 7860 VHL
1
Synthesized DNA
1
stem cell
mesenchymal stem cell
1
See all biosamples
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