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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
166
total RNA-seq
129
ATAC-seq
113
single cell RNA-seq
56
snATAC-seq
31
DNase-seq
17
pCHi-C
10
RRBS
7
Hi-C
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
281
Transcription
217
DNA accessibility
DNA binding
11
DNA methylation
7
3D chromatin structure
Target of assay
3
control
Date released
147
May, 2020
85
May, 2021
54
May, 2022
51
February, 2023
42
February, 2021
40
September, 2020
31
July, 2019
24
June, 2019
11
July, 2018
10
April, 2018
10
October, 2019
8
January, 2021
6
November, 2020
5
December, 2019
3
August, 2017
2
June, 2018
1
March, 2020
1
March, 2023
1
November, 2018
1
September, 2018
Available data
243
bam
232
bigWig
162
tsv
127
fastq
73
zippedFastqFolder
47
bed narrowPeak
34
bed bed3+
30
bigBed narrowPeak
28
bed broadPeak
28
bigBed broadPeak
10
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
3
hic
2
csv
1
bed bed3
1
bedpe bed3+
1
tar
Organism
533
Homo sapiens
Biosample type
1482
tissue
533
primary cell
196
in vitro differentiated cells
114
cell line
7
stem cell
Organ
314
epithelium
pancreas
27
connective tissue
21
kidney
14
vasculature
12
brain
11
blood vessel
10
liver
8
blood
8
bodily fluid
8
heart
5
vein
4
musculature of body
2
adipose tissue
2
artery
2
eye
1
bone element
1
bone marrow
1
pericardium
Project
240
AMP
172
HPAP
120
T1D
1
ITG
Genome assembly (visualization)
254
hg19
195
GRCh38
Lab
238
AMP-T2D consortium
172
Klaus Kaestner, Upenn
122
Kyle Gaulton, UCSD
1
ITG
Audit category:
28
audit script error
24
inconsistent ontology term
organ_slims!
pancreas
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
533 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
DNase-seq
pCHi-C
RRBS
Hi-C
small RNA-seq
DNAme array
FAIRE-seq
primary cell
Langerhans cell
85
48
monocyte
54
15
1
1
exocrine cell
39
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
1
CD4-positive, alpha-beta memory T cell
22
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