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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
166
total RNA-seq
113
single cell RNA-seq
2
small RNA-seq
Assay category
281
Transcription
217
DNA accessibility
209
DNA binding
11
DNA methylation
7
3D chromatin structure
Target of assay
3
control
Date released
55
May, 2021
47
May, 2020
40
September, 2020
39
February, 2023
33
May, 2022
18
July, 2019
13
February, 2021
11
July, 2018
10
April, 2018
5
December, 2019
4
November, 2020
2
June, 2018
2
October, 2019
1
November, 2018
1
September, 2018
Available data
152
bigWig
150
bam
150
tsv
98
fastq
52
zippedFastqFolder
2
bed bed3+
2
csv
Organism
281
Homo sapiens
Biosample type
936
tissue
281
primary cell
138
in vitro differentiated cells
82
cell line
2
stem cell
Organ
163
epithelium
pancreas
15
connective tissue
6
kidney
5
liver
4
heart
3
brain
2
adipose tissue
2
artery
2
blood vessel
2
musculature of body
2
vasculature
1
pericardium
Project
124
HPAP
96
T1D
61
AMP
Genome assembly (visualization)
152
hg19
150
GRCh38
Lab
124
Klaus Kaestner, Upenn
98
Kyle Gaulton, UCSD
59
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
organ_slims!
pancreas
BIOSAMPLE
ASSAY
281 results
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total RNA-seq
single cell RNA-seq
small RNA-seq
primary cell
Langerhans cell
85
monocyte
54
exocrine cell
39
pancreatic cell
9
mesenchymal cell
6
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