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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
135
total RNA-seq
94
single cell RNA-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
233
Transcription
84
DNA binding
66
DNA accessibility
1
3D chromatin structure
Date released
51
May, 2021
45
May, 2020
40
September, 2020
39
February, 2023
33
May, 2022
12
February, 2021
9
April, 2020
4
March, 2023
Available data
96
bam
96
bigWig
96
tsv
73
fastq
52
zippedFastqFolder
Organism
229
Homo sapiens
Biosample type
220
primary cell
9
tissue
2
cell line
2
stem cell
Organ
pancreas
55
epithelium
9
lung
Project
AMP
124
HPAP
96
T1D
9
LungMap
4
community
Genome assembly (visualization)
96
GRCh38
96
hg19
Lab
124
Klaus Kaestner, Upenn
96
Kyle Gaulton, UCSD
KPMP
9
Xin Sun, UCSD
4
Anna Gloyn, Oxford
Audit category:
4
inconsistent ontology term
organ_slims!
pancreas
lab.title!
KPMP
award.project!
AMP
BIOSAMPLE
ASSAY
233 results
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total RNA-seq
single cell RNA-seq
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
primary cell
Langerhans cell
85
monocyte
53
exocrine cell
39
B cell
2
CD8-positive, alpha-beta T cell
2
+ See 22 more…
tissue
lung
9
cell line
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
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