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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
34
ChIP-seq
3
ATAC-seq
3
FAIRE-seq
DNase-seq
Assay category
34
DNA binding
6
DNA accessibility
Target of assay
33
transcription factor
5
RNA binding protein
2
chromatin remodeller
1
histone
1
histone modification
1
narrow histone mark
Date released
32
November, 2017
4
October, 2019
2
July, 2019
1
August, 2017
1
May, 2019
Available data
363
bam
292
fastq
225
bigWig
189
tsv
157
bed narrowPeak
155
txt
141
tagAlign
73
zippedFastqFolder
40
bigBed narrowPeak
32
bed broadPeak
17
bed bedMethyl
17
bigBed bedMethyl
17
bigBed broadPeak
16
bedpe bed3+
15
bed bed3+
15
hic
10
bed bed3
8
csv
7
bed bedgraph
4
hdf5
4
tar
2
ibed
1
vcf
Organism
40
Homo sapiens
Biosample type
32
cell line
4
tissue
2
in vitro differentiated cells
2
primary cell
Organ
32
liver
3
connective tissue
pancreas
1
adipose tissue
1
blood vessel
1
brain
1
epithelium
1
kidney
1
limb
1
musculature of body
1
vasculature
1
vein
Project
40
AMP
Genome assembly (visualization)
GRCh38
694
hg19
Lab
40
AMP-T2D consortium
Audit category:
7
missing controlled_by
Audit category:
2
inconsistent control read length
2
inconsistent control run_type
organ_slims!
pancreas
assay_title!
DNase-seq
assembly!
GRCh38
BIOSAMPLE
ASSAY
40 results
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ChIP-seq
ATAC-seq
FAIRE-seq
cell line
HepG2
32
tissue
adipose tissue
1
frontal cortex
1
kidney
1
muscle of leg
1
in vitro differentiated cells
adipocyte
2
primary cell
endothelial cell of umbilical vein
1
skeletal muscle myoblast
1
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