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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
133
ChIP-seq
9
WGBS
6
RRBS
4
DNase-seq
2
ATAC-seq
Assay category
133
DNA binding
15
DNA methylation
6
DNA accessibility
Target of assay
73
histone modification
72
histone
40
broad histone mark
40
transcription factor
31
narrow histone mark
20
control
6
RNA binding protein
3
chromatin remodeller
Date released
591
February, 2021
328
November, 2017
291
May, 2020
290
August, 2021
251
May, 2021
247
October, 2019
214
June, 2019
154
August, 2017
149
February, 2023
118
May, 2019
102
July, 2019
96
May, 2022
94
December, 2017
81
November, 2018
80
April, 2019
50
March, 2020
47
September, 2023
40
May, 2024
40
September, 2020
39
February, 2018
35
December, 2018
30
January, 2019
24
February, 2020
23
October, 2018
19
April, 2020
15
May, 2023
11
July, 2018
10
April, 2018
8
December, 2019
8
January, 2018
8
January, 2021
6
November, 2019
6
November, 2020
5
March, 2023
4
October, 2017
2
June, 2018
1
August, 2018
1
October, 2022
1
September, 2018
Available data
119
fastq
114
bam
113
bigWig
93
bed narrowPeak
tagAlign
29
bed broadPeak
25
bigBed narrowPeak
15
bigBed broadPeak
14
bed bed3+
6
bed bedMethyl
6
bigBed bedMethyl
Organism
154
Homo sapiens
Biosample type
94
tissue
54
in vitro differentiated cells
6
primary cell
Organ
pancreas
103
connective tissue
49
adipose tissue
34
liver
29
epithelium
11
musculature of body
Project
154
AMP
Genome assembly (visualization)
91
hg19
86
GRCh38
Lab
154
AMP-T2D consortium
Audit category:
17
missing controlled_by
Audit category:
8
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
organ_slims!
pancreas
assay_title!
RNA microarray
files.file_type!
tagAlign
BIOSAMPLE
ASSAY
154 results
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ChIP-seq
WGBS
RRBS
DNase-seq
ATAC-seq
tissue
liver
28
3
1
subcutaneous abdominal adipose tissue
28
3
white adipose tissue
12
skeletal muscle tissue
7
4
adipose tissue
2
3
+ See 2 more…
in vitro differentiated cells
adipocyte
53
1
primary cell
skeletal muscle myoblast
3
1
2
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