Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
total RNA-seq
13
single cell RNA-seq
3
ATAC-seq
1
MPRA
1
snATAC-seq
Assay category
13
Transcription
4
DNA accessibility
Date released
89
February, 2021
8
August, 2021
3
February, 2023
1
May, 2022
1
October, 2022
Available data
1751
bam
1563
bed narrowPeak
1552
bigWig
951
bigBed narrowPeak
828
fastq
379
tagAlign
301
bed broadPeak
278
bigBed broadPeak
242
bed bed3+
194
tsv
102
txt
73
zippedFastqFolder
64
xls
30
bed bedMethyl
30
bigBed bedMethyl
16
bedpe bed3+
16
hic
12
bed bed3
8
csv
7
bed bedgraph
4
hdf5
4
tar
2
ibed
1
tagAlign bed3+
1
vcf
Organism
101
Homo sapiens
Biosample type
98
tissue
3
in vitro differentiated cells
1
cell line
Organ
84
bone element
13
kidney
1
musculature of body
Project
102
AMP
Genome assembly (visualization)
4
hg19
Lab
91
AMP-T2D consortium
8
Katalin Susztak, Upenn
3
Struan F.A. Grant, CHOP
Audit category:
85
inconsistent ontology term
6
audit script error
organ_slims!
pancreas
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
102 results
search-icon
table-tab-icon
Clear Filters
RNA microarray
single cell RNA-seq
ATAC-seq
MPRA
snATAC-seq
tissue
bone element
84
kidney
13
skeletal muscle tissue
1
in vitro differentiated cells
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
cell line
MIN6
1
Download