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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1404
ChIP-seq
964
total RNA-seq
250
ATAC-seq
176
single cell RNA-seq
173
DNase-seq
87
RNA microarray
39
pCHi-C
24
WGBS
18
Hi-C
17
snATAC-seq
14
small RNA-seq
9
RRBS
5
GRO-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
FAIRE-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
173
DNA accessibility
Date released
159
June, 2019
7
November, 2018
5
October, 2019
2
August, 2017
Available data
172
bam
172
bed narrowPeak
172
bigBed narrowPeak
172
bigWig
171
bed broadPeak
171
bigBed broadPeak
170
bed bed3+
8
fastq
Organism
173
Homo sapiens
Biosample type
171
tissue
primary cell
1
cell line
1
in vitro differentiated cells
Organ
69
kidney
36
limb
32
musculature of body
27
brain
27
heart
18
ureter
pancreas
5
blood vessel
5
vasculature
4
artery
4
liver
3
connective tissue
3
eye
2
adipose tissue
2
nerve
1
epithelium
1
spleen
Project
173
AMP
Genome assembly (visualization)
172
GRCh38
158
hg19
Lab
173
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
organ_slims!
pancreas
biosample_type!
primary cell
BIOSAMPLE
ASSAY
173 results
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DNase-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 37 more…
cell line
glomerular visceral epithelial cell
1
in vitro differentiated cells
adipocyte
1
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