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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1653
ChIP-seq
1130
total RNA-seq
379
ATAC-seq
289
single cell RNA-seq
204
DNase-seq
87
RNA microarray
73
snATAC-seq
56
pCHi-C
25
Hi-C
24
WGBS
19
RRBS
16
small RNA-seq
5
GRO-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
FAIRE-seq
3
snDrop-seq
2
Capture-C
2
HiChIP
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
3
DNA accessibility
1
DNA methylation
Date released
2
July, 2019
1
May, 2021
1
October, 2019
Available data
3
bam
3
bed narrowPeak
3
bigBed narrowPeak
3
bigWig
1
tar
Organism
4
Homo sapiens
Biosample type
2
primary cell
2
tissue
Organ
pancreas
1
blood vessel
1
brain
1
epithelium
1
kidney
1
vasculature
1
vein
Project
4
AMP
Genome assembly (visualization)
3
hg19
Lab
4
AMP-T2D consortium
organ_slims!
pancreas
assay_title!
CRISPR RNA-seq
BIOSAMPLE
ASSAY
4 results
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FAIRE-seq
DNAme array
primary cell
endothelial cell of umbilical vein
1
monocyte
1
tissue
frontal cortex
1
kidney
1
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