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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1653
ChIP-seq
1130
total RNA-seq
379
ATAC-seq
289
single cell RNA-seq
204
DNase-seq
87
RNA microarray
73
snATAC-seq
56
pCHi-C
25
Hi-C
24
WGBS
19
RRBS
16
small RNA-seq
5
GRO-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
FAIRE-seq
3
snDrop-seq
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
76
DNA accessibility
Date released
27
February, 2021
22
May, 2022
10
April, 2020
8
January, 2021
6
August, 2021
2
July, 2019
1
October, 2019
Available data
27
fastq
21
zippedFastqFolder
3
bam
3
bed narrowPeak
3
bigBed narrowPeak
3
bigWig
1
bed bed3+
1
tar
1
txt
Organism
75
Homo sapiens
Biosample type
57
primary cell
19
tissue
Organ
pancreas
10
lung
8
blood
8
bodily fluid
7
kidney
1
blood vessel
1
brain
1
epithelium
1
musculature of body
1
vasculature
1
vein
Project
48
HPAP
10
AMP
10
LungMap
8
T1D
Genome assembly (visualization)
4
hg19
Lab
48
Klaus Kaestner, Upenn
10
Xin Sun, UCSD
8
Kyle Gaulton, UCSD
6
Katalin Susztak, Upenn
4
AMP-T2D consortium
Audit category:
28
audit script error
organ_slims!
pancreas
assay_title!
Capture-C
BIOSAMPLE
ASSAY
76 results
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snATAC-seq
FAIRE-seq
primary cell
Langerhans cell
48
peripheral blood mononuclear cell
8
endothelial cell of umbilical vein
1
tissue
lung
10
kidney
6
1
frontal cortex
1
skeletal muscle tissue
1
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