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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1613
ChIP-seq
1130
total RNA-seq
379
ATAC-seq
289
single cell RNA-seq
204
DNase-seq
87
RNA microarray
73
snATAC-seq
56
pCHi-C
25
Hi-C
24
WGBS
19
RRBS
16
small RNA-seq
5
GRO-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
FAIRE-seq
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
16
Transcription
Date released
84
February, 2021
16
July, 2019
2
December, 2019
1
August, 2021
Available data
84
txt
18
tsv
16
bam
16
bigWig
Organism
102
Homo sapiens
Biosample type
101
tissue
2
primary cell
Organ
84
bone element
4
adipose tissue
4
brain
4
connective tissue
3
kidney
3
liver
2
musculature of body
pancreas
1
epithelium
1
heart
Project
103
AMP
Genome assembly (visualization)
16
GRCh38
16
hg19
Lab
103
AMP-T2D consortium
Audit category:
84
inconsistent ontology term
2
audit script error
organ_slims!
pancreas
BIOSAMPLE
ASSAY
103 results
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RNA microarray
small RNA-seq
tissue
bone element
84
right lobe of liver
2
subcutaneous adipose tissue
1
1
cerebellum (Hemisphere)
1
diencephalon
1
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primary cell
mesenchymal stem cell of adipose
1
skeletal muscle satellite cell
1
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