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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1653
ChIP-seq
1130
total RNA-seq
379
ATAC-seq
289
single cell RNA-seq
204
DNase-seq
87
RNA microarray
73
snATAC-seq
56
pCHi-C
25
Hi-C
24
WGBS
19
RRBS
16
small RNA-seq
5
GRO-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
FAIRE-seq
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
73
DNA accessibility
16
Transcription
Date released
27
February, 2021
22
May, 2022
16
July, 2019
10
April, 2020
8
January, 2021
6
August, 2021
Available data
27
fastq
21
zippedFastqFolder
16
bam
16
bigWig
16
tsv
1
bed bed3+
1
txt
Organism
88
Homo sapiens
Biosample type
58
primary cell
31
tissue
Organ
pancreas
10
lung
8
blood
8
bodily fluid
7
kidney
4
brain
3
adipose tissue
3
connective tissue
3
liver
3
musculature of body
1
heart
Project
48
HPAP
23
AMP
10
LungMap
8
T1D
Genome assembly (visualization)
17
hg19
16
GRCh38
Lab
48
Klaus Kaestner, Upenn
17
AMP-T2D consortium
10
Xin Sun, UCSD
8
Kyle Gaulton, UCSD
6
Katalin Susztak, Upenn
Audit category:
28
audit script error
organ_slims!
pancreas
BIOSAMPLE
ASSAY
89 results
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snATAC-seq
small RNA-seq
primary cell
Langerhans cell
48
peripheral blood mononuclear cell
8
mesenchymal stem cell of adipose
1
skeletal muscle satellite cell
1
tissue
lung
10
kidney
6
right lobe of liver
2
skeletal muscle tissue
1
1
cerebellum (Hemisphere)
1
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