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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1605
ChIP-seq
611
total RNA-seq
357
ATAC-seq
271
single cell RNA-seq
204
DNase-seq
54
pCHi-C
46
snATAC-seq
25
Hi-C
24
WGBS
19
RRBS
16
small RNA-seq
5
GRO-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
FAIRE-seq
3
RNA microarray
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
46
DNA accessibility
Date released
February, 2021
22
May, 2022
10
April, 2020
8
January, 2021
6
August, 2021
Available data
21
zippedFastqFolder
1
bed bed3+
1
txt
Organism
45
Homo sapiens
Biosample type
29
primary cell
17
tissue
Organ
pancreas
10
lung
8
blood
8
bodily fluid
6
kidney
1
musculature of body
Project
21
HPAP
10
LungMap
8
T1D
7
AMP
Genome assembly (visualization)
1
hg19
Lab
21
Klaus Kaestner, Upenn
10
Xin Sun, UCSD
8
Kyle Gaulton, UCSD
6
Katalin Susztak, Upenn
1
AMP-T2D consortium
Audit category:
1
audit script error
organ_slims!
pancreas
month_released!
February, 2021
BIOSAMPLE
ASSAY
46 results
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snATAC-seq
primary cell
Langerhans cell
21
peripheral blood mononuclear cell
8
tissue
lung
10
kidney
6
skeletal muscle tissue
1
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