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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
197
DNase-seq
66
ChIP-seq
Assay category
197
DNA accessibility
66
DNA binding
Target of assay
47
transcription factor
19
histone
19
histone modification
10
broad histone mark
9
narrow histone mark
7
RNA binding protein
4
chromatin remodeller
1
other context
1
other post-translational modification
Date released
183
June, 2019
64
November, 2017
August, 2017
8
October, 2019
7
November, 2018
1
November, 2020
Available data
2589
bam
2428
bigWig
1510
bed narrowPeak
1183
tsv
926
bigBed narrowPeak
763
fastq
310
tagAlign
272
bed broadPeak
263
bigBed broadPeak
230
bed bed3+
155
txt
73
zippedFastqFolder
64
xls
24
bed bedMethyl
24
bigBed bedMethyl
16
bedpe bed3+
16
hic
12
bed bed3
8
csv
7
bed bedgraph
4
hdf5
4
tar
2
ibed
1
tagAlign bed3+
1
vcf
Organism
263
Homo sapiens
Biosample type
170
tissue
58
cell line
35
primary cell
Organ
78
kidney
63
liver
38
brain
36
limb
33
musculature of body
30
heart
22
epithelium
18
ureter
17
vasculature
13
blood vessel
8
connective tissue
pancreas
4
artery
4
eye
4
vein
2
adipose tissue
2
nerve
1
spleen
Project
263
AMP
Genome assembly (visualization)
247
GRCh38
242
hg19
Lab
263
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
13
inconsistent control read length
organ_slims!
pancreas
assembly!
hg18
month_released!
August, 2017
BIOSAMPLE
ASSAY
263 results
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DNase-seq
ChIP-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 37 more…
cell line
HepG2
58
primary cell
endothelial cell of umbilical vein
2
2
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
cardiac fibroblast
3
choroid plexus epithelial cell
1
2
+ See 17 more…
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