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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
133
total RNA-seq
87
ChIP-seq
13
ATAC-seq
Assay category
133
Transcription
87
DNA binding
13
DNA accessibility
Target of assay
84
histone
84
histone modification
44
broad histone mark
40
narrow histone mark
3
transcription factor
Date released
542
February, 2021
280
November, 2017
233
May, 2021
207
May, 2020
206
June, 2019
199
October, 2019
105
August, 2021
97
August, 2017
95
May, 2019
77
December, 2017
75
July, 2019
73
November, 2018
64
April, 2019
35
February, 2023
31
February, 2018
30
December, 2018
26
January, 2019
12
May, 2023
11
July, 2018
10
April, 2018
10
March, 2020
9
October, 2017
6
November, 2019
6
November, 2020
5
December, 2019
5
October, 2018
2
June, 2018
1
March, 2023
Available data
233
bam
220
bigWig
133
tsv
100
bed narrowPeak
87
tagAlign
Organism
233
Homo sapiens
Biosample type
149
primary cell
82
in vitro differentiated cells
2
tissue
Organ
pancreas
9
epithelium
3
heart
2
embryo
1
connective tissue
Project
135
T1D
98
AMP
Genome assembly (visualization)
273
hg19
233
GRCh38
Lab
135
Kyle Gaulton, UCSD
98
AMP-T2D consortium
Audit category:
68
inconsistent ontology term
organ_slims!
pancreas
BIOSAMPLE
ASSAY
233 results
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total RNA-seq
ChIP-seq
ATAC-seq
primary cell
monocyte
51
84
13
embryonic stem cell
1
in vitro differentiated cells
cardiomyocytes
59
3
induced pluripotent stem cell
9
cardiac fibroblast
1
cardiomyocytes (cardiac muscle cell)
1
endothelial cell
1
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tissue
cardiac atrium
1
cardiac ventricle
1
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