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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
189
ChIP-seq
124
total RNA-seq
62
ATAC-seq
26
single cell RNA-seq
22
DNase-seq
10
RRBS
6
Hi-C
2
small RNA-seq
1
FAIRE-seq
1
pCHi-C
Assay category
189
DNA binding
152
Transcription
85
DNA accessibility
10
DNA methylation
6
3D chromatin structure
Target of assay
172
histone
172
histone modification
91
broad histone mark
81
narrow histone mark
10
RNA binding protein
10
control
10
transcription factor
1
chromatin remodeller
Date released
184
May, 2021
90
May, 2020
40
June, 2019
31
July, 2019
26
October, 2019
18
August, 2017
11
July, 2018
10
April, 2018
9
November, 2017
6
November, 2020
5
December, 2019
4
May, 2019
3
August, 2021
3
February, 2021
2
June, 2018
1
March, 2020
Available data
414
bigWig
392
bam
220
bed narrowPeak
150
tsv
99
tagAlign
80
bigBed narrowPeak
49
fastq
42
bed broadPeak
42
bigBed broadPeak
30
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
2
hic
1
bed bed3
1
bedpe bed3+
1
tar
Organism
443
Homo sapiens
Biosample type
1342
tissue
472
cell line
443
primary cell
295
in vitro differentiated cells
3
stem cell
Organ
227
epithelium
pancreas
34
connective tissue
31
vasculature
25
blood vessel
25
kidney
21
brain
17
vein
13
liver
12
musculature of body
10
heart
4
eye
2
adipose tissue
2
artery
1
pericardium
Project
263
AMP
180
T1D
Genome assembly (visualization)
443
hg19
344
GRCh38
Lab
228
AMP-T2D consortium
215
Kyle Gaulton, UCSD
Audit category:
37
inconsistent ontology term
1
audit script error
Audit category:
2
inconsistent assembly
1
inconsistent control read length
1
inconsistent control run_type
organ_slims!
pancreas
BIOSAMPLE
ASSAY
443 results
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ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RRBS
Hi-C
small RNA-seq
FAIRE-seq
pCHi-C
primary cell
monocyte
84
53
15
CD8-positive, alpha-beta T cell
33
4
2
skeletal muscle myoblast
15
1
2
1
endothelial cell of umbilical vein
12
2
2
1
epithelial cell of proximal tubule
8
1
1
1
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