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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
139
ChIP-seq
136
total RNA-seq
42
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
1
DNase-seq
Assay category
139
DNA binding
136
Transcription
43
DNA accessibility
4
3D chromatin structure
Target of assay
111
histone
111
histone modification
broad histone mark
54
narrow histone mark
48
transcription factor
36
control
11
RNA binding protein
3
chromatin remodeller
Date released
119
May, 2021
48
August, 2017
35
August, 2021
32
December, 2017
31
February, 2018
26
February, 2021
16
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
1
August, 2018
Available data
251
bam
220
bigWig
129
tsv
110
fastq
93
bed narrowPeak
23
tagAlign
21
bed bed3+
10
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
333
Homo sapiens
Biosample type
2002
tissue
619
primary cell
561
cell line
333
in vitro differentiated cells
9
stem cell
Organ
77
connective tissue
25
embryo
17
epithelium
8
liver
pancreas
1
adipose tissue
1
heart
Project
333
AMP
Genome assembly (visualization)
259
hg19
226
GRCh38
4
hg18
Lab
289
AMP-T2D consortium
37
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
115
inconsistent ontology term
audit script error
Audit category:
6
missing controlled_by
Audit category:
12
inconsistent control read length
organ_slims!
pancreas
audit.ERROR.category!
audit script error
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
333 results
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ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
DNase-seq
in vitro differentiated cells
adipocyte
47
5
8
1
1
cardiomyocytes
3
59
embryonic stem cell
29
7
6
1
neural progenitor cell
14
7
10
cardiac precursors (cardiac muscle cell)
19
1
1
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