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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
199
DNase-seq
99
ChIP-seq
Assay category
199
DNA accessibility
99
DNA binding
Target of assay
50
histone
50
histone modification
49
transcription factor
26
broad histone mark
24
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
183
June, 2019
70
November, 2017
29
August, 2017
8
October, 2019
7
November, 2018
October, 2017
1
November, 2020
Available data
2692
bam
2497
bigWig
1555
bed narrowPeak
1174
tsv
945
bigBed narrowPeak
848
fastq
365
tagAlign
298
bed broadPeak
278
bigBed broadPeak
243
bed bed3+
149
txt
73
zippedFastqFolder
64
xls
30
bed bedMethyl
30
bigBed bedMethyl
16
bedpe bed3+
15
hic
12
bed bed3
7
bed bedgraph
4
hdf5
4
tar
3
csv
2
ibed
1
tagAlign bed3+
1
vcf
Organism
298
Homo sapiens
Biosample type
190
tissue
58
cell line
49
primary cell
1
in vitro differentiated cells
Organ
78
kidney
63
liver
46
musculature of body
44
brain
36
limb
30
heart
22
epithelium
pancreas
18
ureter
17
vasculature
13
blood vessel
10
connective tissue
4
artery
4
eye
4
vein
3
adipose tissue
2
nerve
1
spleen
Project
298
AMP
Genome assembly (visualization)
277
hg19
265
GRCh38
Lab
298
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
13
inconsistent control read length
1
inconsistent assembly
organ_slims!
pancreas
audit.ERROR.category!
audit script error
month_released!
October, 2017
BIOSAMPLE
ASSAY
298 results
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DNase-seq
ChIP-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 42 more…
cell line
HepG2
58
primary cell
skeletal muscle myoblast
1
13
endothelial cell of umbilical vein
2
2
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
cardiac fibroblast
3
+ See 18 more…
in vitro differentiated cells
adipocyte
1
See all biosamples
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