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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
26
ChIP-seq
Assay category
26
DNA binding
Target of assay
15
transcription factor
11
histone
11
histone modification
7
chromatin remodeller
6
broad histone mark
5
narrow histone mark
1
RNA binding protein
Date released
November, 2017
11
December, 2017
8
August, 2017
5
November, 2018
2
February, 2018
Available data
26
bam
26
bed narrowPeak
26
bigWig
26
fastq
10
bed bed3+
7
bigBed narrowPeak
Organism
26
Homo sapiens
Biosample type
17
in vitro differentiated cells
5
cell line
2
stem cell
1
primary cell
1
tissue
Organ
pancreas
6
connective tissue
6
liver
5
epithelium
3
embryo
Project
26
AMP
Genome assembly (visualization)
26
GRCh38
26
hg19
Lab
26
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
26
inconsistent control read length
5
inconsistent control run_type
2
inconsistent assembly
organ_slims!
pancreas
month_released!
November, 2017
BIOSAMPLE
ASSAY
26 results
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ChIP-seq
in vitro differentiated cells
adipocyte
6
definitive endodermal cell
4
Posterior foregut
2
pancreatic endoderm
2
primitive gut cell
2
+ See 1 more…
cell line
HepG2
5
stem cell
hESC
2
primary cell
skeletal muscle myoblast
1
tissue
liver
1
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