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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
ChIP-seq
66
snATAC-seq
17
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
Hi-C
Assay category
Transcription
84
DNA binding
66
DNA accessibility
1
3D chromatin structure
Target of assay
84
histone
84
histone modification
44
broad histone mark
40
narrow histone mark
Date released
101
May, 2021
27
February, 2021
21
May, 2022
10
April, 2020
8
January, 2021
5
February, 2023
1
March, 2023
Available data
84
bam
84
bed narrowPeak
84
bigWig
84
tagAlign
27
fastq
21
zippedFastqFolder
1
hic
Organism
172
Homo sapiens
Biosample type
157
primary cell
11
tissue
5
cell line
Organ
pancreas
101
epithelium
10
lung
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
AMP
114
T1D
48
HPAP
10
LungMap
1
ITG
Genome assembly (visualization)
85
GRCh38
84
hg19
Lab
114
Kyle Gaulton, UCSD
48
Klaus Kaestner, Upenn
10
Xin Sun, UCSD
1
ITG
Audit category:
27
audit script error
1
inconsistent ontology term
organ_slims!
pancreas
award.project!
AMP
assay_slims!
Transcription
BIOSAMPLE
ASSAY
173 results
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ChIP-seq
snATAC-seq
pCHi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
Hi-C
primary cell
monocyte
84
1
Langerhans cell
48
peripheral blood mononuclear cell
8
CD4-positive, alpha-beta T cell
2
B cell
1
+ See 13 more…
tissue
lung
10
thymus
1
cell line
EndoC_BH1
3
2
See all biosamples
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